Amos's WWW links page

Protein and associated topics databases

• SWISS-PROT - SWISS-PROT annotated protein sequence db
• PROSITE - Dictionary of protein sites and patterns
• BLOCKS - BLOCKS db
• PRINTS - Protein Motif fingerprint db
• ProDom - Protein domain db
• SBASE - SBASE domain db
• YEPD - Yeast protein db
• O-GLYCBASE - O-glycosylation sites db

Protein 3D structure and associated topics databases

• PDB - Protein Data Bank
• SWISS-3DIMAGE - 3D images of proteins and other biological macromolecules
• SCOP - Structural classification of proteins

Protein 2D gel servers

• WORLD-2DPAGE - An index of 2D gel WWW servers

Nucleotide and associated topics databases

• EMBL - EMBL Nucleotide sequence db (EBI)
• GSDB - Genomic Sequence db
• Vector db - Vector sequence db
• NDB - Nucleic Acid Databank (3D structures)
• RDP - Ribosomal db Project
• sRNA db - Small RNA db
• SSU rRNA - Small ribosomal subunit db
• LSU rRNA - Large ribosomal subunit db
• uRNADB - uRNA db
• RNAmod db - RNA modification db
• MPDB - Molecular probe db
• PCR - PCR primers db
• IMGT - ImMunoGeneTics db
• CUTG - Codon usage db

Species specific databases

• OMIM - Online Mendelian Inheritance in Man
• GDB - Genome Data Base
• UniGene - Human transcripts in GenBank
• Chr9 - Human chromosome 9 db
• 11DB - Human chromosome 11 db
• Search 13 - Human chromosome 13 db
• HGC Chr22 - Human genome center for chromosome 22

• OMIA - Online Mendelian Inheritance in Animals
• MGD - Mouse genome db
• RatMAP - Rat genome db
• DGP - Dog Genome Project
• BOVMAP - Bovine genome db
• ChickBASE - Chicken genome db
• The fish net - Zebrafish server

• AceDb - Caenorhabditis elegans db
• FlyBase - Drosophila genetic and molecular db
• FlyView - Drosophila image db
• GIFTS - Gene interactions in the Fly db
• Mosquito Genomics

• AtDB - Arabidopsis thaliana db
• MaizeDb - Maize genome db
• Soybase - Soybean genome db

• SWISS-PROT Yeast list - The 'yeast' file is linked to WWW sites and to all protein sequences for S.cerevisiae
• SGD - Saccharomyces genome db

• SWISS-PROT E.coli list - The 'ecoli' file is linked to WWW sites and to all protein sequences for E.coli
• ECDC - E.coli db collection
• EcoCyc - E.coli genes and metabolism
• GenProtEC - E.coli genes and gene products
• SWISS-PROT B.subtilis list - The 'subtilis' file is linked to WWW sites and to all protein sequences for B.subtilis
• NRSub - Bacillus subtilis non-redundant db
• MadBase - Microbial advanced db (B.subtilis)
• SWISS-PROT H.influenzae list - The 'haeinflu' file is linked to WWW sites and to all protein sequences for H.influenzae
• HIDC - H.influenzae db collection
• MycDB - Mycobacterium db
• M.leprae - GTC (CRI) Mycobacterium leprae data
• Cyanobase - Synechocystis PCC 6803 db

• HIV - HIV and related species db
• Sander's virology links - links to all the Virology servers by David M. Sander

Gene(s)/protein(s) specific databases

• AAA - AAA family of ATPases server
• Cytokines Web - Structure and function of cytokines and their receptors
• Cytokine - Cytokine server
• Globin - Beta-like globin gene cluster server
• ENZYME - Enzyme nomenclature database
• ESTHER - Esterases and alpha/beta hydrolase enzymes
• HAMSTeRS - Factor VIII mutations db
• GRBase - Gene Regulation db
• GCRDb - G protein coupled receptor db
• GPCRDB - G protein coupled receptor db (7TM) at EMBL
• Histones - Histones db and 3D fold
• P450 - Directory of P450-containing systems
• PAHdb - PAH Mutations db
• REBASE - Restriction enzymes and methylases
• SPAD - Signaling pathway db
• SRPDB - Signal Recognition Particle db
• TRANSFAC - Transcription factor db
• DCB - Dictionary of cell biology

Biological journals Web servers

• SWISS-PROT journals list - The 'jourlist' file provides direct links to most biological journals home pages
• AP - Academic Press
• ASM - American Soc. Microbiol. (Inf. Immun., J. Bacteriol., AEM, J. Virol., etc.)
• Cell - Cell Press (Cell, Immunity, Neuron)
• CSHL - Cold Spring Harbor Laboratory Press (Genes Dev., Genome Res.)
• CUP - Cambridge University Press (Prot. Sci., RNA, etc.)
• Elsevier
• FASEB - FASEB J., FASEB Newslett.
• KAP - Kluwer Academic Publishers
• OUP - Oxford University Press
• Springer-Verlag
• Company of Biologists Ltd. - BioEssays, JCS, Development, etc.

• Gene-Combis
• Human Genome News
• Journal of Biological Chemistry
• Journal of Molecular Biology
• Molecular Vision
• Nature
• New Scientist
• Science

Some biocomputing servers homepages

• EBI - European Bioinformatics Institute
• NCBI - National Center for Biotechnology Information
• Japanese GenomeNet
• ANGIS - Australian National Genomic Information Service
• ANU - Australian National University Bioinformatics

• BCD - INN - Weizmann Biological Computing Division / Israel EMBNet node
• ISREC - ISREC bioinformatics group (Lausanne / Swizerland)
• CBRG - Computational Biochemistry Research Group (Zurich / Switzerland)

• INFOBIOGEN - INFOBIOGEN - French EMBNet node
• Pasteur - Institut Pasteur - Paris
• Genethon - Genethon / France
• ABI - Atelier BioInformatique / Marseille
• Sanger - Sanger centre (Hinxton / UK)